Publications

Affiliation

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European Centre for Living Technology (ECLT),
Ca' Bottacin, Dorsoduro 3911, 30123 - Venice, Italy

Acknowledgment

If you have been involved in ECLT activities an acknowledgement to the Centre would be much appreciated.
Please use standard sentence here proposed to cite ECLT in publications:

The author(s) would like to acknowledge networking support by the European Centre for Living Technology (ECLT), Ca' Foscari University of Venice.


Latest publications

Encoding Brain Networks Through Geodesic Clustering of Functional Connectivity for Multiple Sclerosis Classification

Muhammad Abubakar Yamin; Paola Valsasina; Michael Dayan; Sebastiano Vascon; Jacopo Tessadori; Massimo Filippi; Vittorio Murino; Maria A. Rocca; Diego Sona

Published in IEEE Institute of Electrical and Electronics Engineers

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Algorithmic extraction of smartphone accelerometer-derived mechano-biological descriptors of resistance exercise is robust to changes in intensity and velocity

Claudio Viecelli, David Aguayo, Samuel Dällenbach, David Graf, Basil Achermann, Ernst Hafen, Rudolf M. Füchslin

PLOS ONE, July 20-2021


Did Human Culture Emerge in a Cultural Evolutionary Transition in Individuality?

Dinah R. Davison, Claes Andersson, Richard E. Michod & Steven L. Kuhn 

Biological Theory (2021)

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Building blocks of protein structures: Physics meets biology

Tatjana Škrbić, Amos Maritan, Achille Giacometti, George D. Rose, and Jayanth R. Banavar

Phys. Rev. E 104, 014402
Published in 2021

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Spontaneous dimensional reduction and ground state degeneracy in a simple chain model

Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar

Phys. Rev. E 104, L012101
Published 2021

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Flow of online misinformation during the peak of the COVID-19 pandemic in Italy

Guido Caldarelli, Rocco De Nicola, Marinella Petrocchi, Manuel Pratelli & Fabio Saracco

EPJ Data Science volume 10, Article number: 34
Published in 2021

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The AI-Atlas: Didactics for teaching AI and machine learning on-site, online, and hybrid

Thilo Stadelmann, Julian Keuzenkamp, Helmut Grabner and Christoph Würsch

Education Sciences 2021, 11(7), 318;
(This article belongs to the Special Issue Artificial Intelligence and Education
Published in 2021

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The physics of financial networks

M. Bardoscia, P. Barucca, S. Battiston, F. Caccioli, G. Cimini, D. Garlaschelli, F. Saracco,
T. Squartini and G. Caldarelli 

Nature Reviews Physics (2021)

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HELP: An LSTM-based approach to hyperparameter exploration in neural network learning

Wendi Li, Wing W.Y. Ng, Ting Wang, Marcello Pelillo, Sam Kwong

Neurocomputing, Volume 442,
28 June 2021, Pages 161-172

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Local sequence-structure relationships in proteins

Tatjana Škrbić, Amos Maritan, Achille Giacometti, Jayanth R. Banavar

Protein Science, 30 (4), pp. 818-829.
Published in 2021.

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A Fast and Effective Method to Identify Relevant Sets of Variables in Complex Systems

Gianluca D’Addese, Martina Casari, Roberto Serra, Marco Villani

Mathematics, 9(9), art. no. 1022
Published in 2021

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LiSSA: Localized Stochastic Sensitive Autoencoders

Ting Wang, Wing W. Y. Ng, Marcello Pelillo, Sam Kwong

IEEE Transactions on Cybernetics, 51(5), art. no. 8764568, pp. 2748-2760.
Published in 2021

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MetNet: A two-level approach to reconstructing and comparing metabolic networks

Nicoletta Cocco, Mercè Llabrés, Mariana Reyes-Prieto, Marta Simeoni

In PLOS ONE
Published in 2021

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Dynamical properties and path dependence in a gene-network model of cell differentiation

Michele Braccini, Andrea Roli, Marco Villani & Roberto Serra 

Soft Computing volume 25,
pages 6775–6787 (2021)

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Asymptotic information-theoretic detection of dynamical organization in complex systems

Gianluca D’Addese, Laura Sani, Luca La Rocca, Roberto Serra and Marco Villani

Entropy, 23 (4), art. no. 398
Published in 2021


Unveiling the binding mode of perfluorooctanoic acid to human serum albumin

L. Maso, M. Trande, S.o Liberi, G. Moro, E. Daems, S.a Linciano, F. Sobott, S. Covaceuszach, A. Cassetta, S. Fasolato, L. M. Moretto, K. De Wael, L. Cendron, A. Angelini 

Protein Science, 30 (4), pp. 830-841.
Published in 2021.

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Native mass spectrometry for the design and selection of protein bioreceptors for perfluorinated compounds

E. Daems, G. Moro, H. Berghmans, L.M. Moretto, S. Dewilde, A. Angelini, F. Sobott, K. De Wael

Analyst, 146 (6), pp. 2065-2073
Published in 2021

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Phase behavior of hard cylinders

Joyce T. Lopes, Flavio Romano, Eric Grelet, Luís F. M. Franco and Achille Giacometti

J. Chem. Phys. 154, 104902
Published in 2021

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Mesoporous zirconia nanoparticles as drug delivery systems: Drug loading, stability and release

Leonetti, B., Perin, A., Ambrosi, E.K., Sponchia, G., Sgarbossa, P., Castellin, A., Riello, P., Scarso, A.

Journal of Drug Delivery Science and Technology, 61, art. no. 102189.
Published in 2021

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True scale-free networks hidden by finite size effects

Serafino, M., Cimini, G., Maritan, A., Rinaldo, A., Suweis, S., Banavar, J.R., Caldarelli, G.

Proceedings of the National Academy of Sciences of the United States of America, 118 (2),
Published in 2021

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A Neural Network Model for Lead Optimization of MMP12 Inhibitors

Dagnew, T.M., Silvestri, C., Slanzi, D., Poli, I.

Lecture Notes in Computer Science
(including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12664 LNCS, pp. 323-335
Published in 2021

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Publications (2020)

Computational pipeline to probe NaV1.7 gain-of-function variants in neuropathic painful syndromes

Alberto A. Toffano, Giacomo Chiarot, Stefano Zamuner, Margherita Marchi, Erika Salvi, Stephen G. Waxman, Catharina G. Faber, Giuseppe Lauria, Achille Giacometti and Marta Simeoni 

Scientific Reports volume 10,
Article number: 17930 (2020)

Published in 2020

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Can the roles of polar and non-polar moieties be reversed in non-polar solvents?

Cedrix J Dongmo Foumthuim, Manuel Carrer, Maurine Houvet, Tatjana Škrbić, Giuseppe Graziano, Achille Giacometti
Phys Chem Chem Phy, 2020 Nov 18;
22(44):25848-25858
Published in 2020

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An integrated DEM–FEM approach to study breakage in packing of glass cartridges on a conveyor belt

Daniela Paola Boso, Tommaso Braga, Simone Ravasini, Tatjana Škrbić, Andrea Puglisi, Odra Pinato, Alberto Chillon, Maria Chiara Frare & Achille Giacometti

Granular Matter volume 22,
Article number: 73 (2020) 

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How (Not) to Measure Bias in Face Recognition Networks

Stefan Glüge, Mohammadreza Amirian, Dandolo Flumini, and Thilo Stadelmann

In Proceedings of the 9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR’20), Springer, LNAI, pp. 125-137
Published in 2020

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Combining Reinforcement Learning with Supervised Deep Learning for Neural Active Scene Understanding

Dano Roost, Ralph Meier, Giovanni Toffetti Carughi, and Thilo Stadelmann

In Proceedings of the Active Vision and Perception in Human(-Robot) Collaboration Workshop at IEEE RO-MAN 2020 (AVHRC’20)
Published in 2020


Can Polarity-Inverted Surfactants Self-Assemble in Nonpolar Solvents?

Manuel Carrer, Tatjana Škrbić, Sigbjørn Løland Bore, Giuseppe Milano, Michele Cascella and Achille Giacometti

The Journal of Physical Chememistry B 2020
124, 29, 6448–6458
Published in 2020

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Design Patterns for Resource-Constrained Automated Deep-Learning Methods

Lukas Tuggener, Mohammadreza Amirian, Fernando Benites, Pius von Däniken, Prakhar Gupta, Frank-Peter Schilling, and Thilo Stadelmann

In AI (section “Intelligent Systems: Theory and Applications”)", Springer, LNAI, 1(4):510-538
Published in 2020


Macrocycle synthesis strategy based on step-wise "adding and reacting" three components enables screening of large combinatorial libraries

Mothukuri G.K., Kale S.S., Stenbratt C.L., Zorzi A., Vesin J., Bortoli Chapalay J., Deyle K., Turcatti G., Cendron L., Angelini A. and C. Heinis 

In Chemical Science, 11, 7858-63
Published in 2020

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Restricted clonality and limited germinal center reentry characterize memory B cell reactivation by boosting

Mesin L., Schiepers A., Ersching J., Barbulescu A., Battaglioni Cavazzoni C., Angelini A., Okada T., Kurosaki T. and G. D. Victora 

In Cell, 180, 92-106
Published in 2020

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Evolving always‐critical networks

Villani, M., Magri, S., Roli, A., & Serra, R.

In LIFE, 10, 1–20
Published in 2020

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Two sides of the same coin: Improved ancient coin classification using Graph Transduction Games

Aslan, S., Vascon, S., & Pelillo, M. 

In Pattern Recognition Letters, vol 131, pp. 158-165
Published in 2020

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Benchmarking algorithms for food localization and semantic segmentation

Aslan, S., Ciocca, G., Mazzini, D., & Schettini, R. 

In International Journal of Machine Learning and Cybernetics, pp.1-21
Published in 2020

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Adsorption and Isomerization of Glyoxal and Methylglyoxal at the Air/Hydroxylated Silica Surface Silica

I.Gladich, M. A. Carignano and J.S. Francisco

In JCP, 152,164702
Published in 2020

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Hydration, Solvation and Isomerization of Methylglyoxal at the Air/Water Interface: New Mechanistic Pathways

C. Zhu, X. C. Zeng, J.S. Francisco, I. Gladich

In JACS, 142, 12, 5574-5582
Published in 2020

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Solvation and Stabilization of Single Strand RNA at the Air/Ice Interface Support a Primordial RNA World on Ice

Ivan Gladich, Margaret L. Berrens, Penny M. Rowe, Rodolfo G. Pereyra, and Steven Neshyba

In JPC-C, 124, 34, 18587–18594
Published in 2020

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Covalent immobilization of delipidated human serum albumin on poly(pyrrole-2-carboxylic) acid film for the impedimetric detection of perfluorooctanoic acid

Moro G., Bottari F., Liberi S., Covaceuszach S., Cassetta A., Angelini A., De Wael K. and L.M. Moretto 

In Bioelectrochemistry, 134, 107540
Published in 2020

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Introducing PIONEER: a project to harness big data in prostate cancer research

Omar, M.I., Roobol, M.J., Ribal, M.J., Thomas Abbott, Paul- Michael Agapow , Sonia Araujo, Alex Asiimwe , Charles Auffray , Irina Balaur , Katharina Beyer, Chiara Bernini, Anders Bjartell, Alberto Briganti, John- Edward Butler- Ransohoff, Riccardo Campi , Marinel Cavelaars, Bertrand De Meulder, Doron Lancet, Kees van Bochove , Femke van Diggelen, Mieke Van Hemelrijck, Hein Van Poppel , Jihong Zong, James N’Dow and The PIONEER Consortium (2020)

In Nat Rev Urol 17, 351–362
Published in 2020


A unified nomenclature for vertebrate olfactory receptors

T Olender, TEM Jones, E,  Bruford and D Lancet

BMC evolutionary biology 20, 1-12
Published in 2020


COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

Charles Auffray, Niklas Blomberg, Myrna Bonaldo, Bertrand Boutron, Samir Brahmachari, Christian Bréchot, Alfredo Cesario, Sai-Juan Chen, Karine Clément, Daria Danilenko, Alberto Di Meglio, Andrea Gelemanovic, Carole Goble, Takashi Gojobori, Jason D Goldman, Michel Goldman, Yi-Ke Guo, James Heath, Leroy Hood, Peter Hunter, Li Jin, Doron Lancet, Emiel Wouters

Soc Sci Res Network
Published in 2020


Emergence of Organisms

Roli, A., & Kauffman, S.

In Entropy, 22, 1163–1174
Published in 2020

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The Detection of Dynamical Organization in Cancer Evolution Models

Sani L., D’Addese G., Graudenzi A., Villani M.

In Artificial Life and Evolutionary Computation. WIVACE 2019, vol. 1200
Published in 2020

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Selecting for Positive Responses to Knock Outs in Boolean Networks

Villani M., Magrì S., Roli A., Serra R.

In Artificial Life and Evolutionary Computation. WIVACE 2019, vol. 1200
Published in 2020

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The effects of a simplified model of chromatin dynamics on attractors robustness in random boolean networks with self-loops: An experimental study

Braccini, M.; Roli, A.; Villani, M.; Montagna, S.; Serra, R.

In Artificial Life and Evolutionary Computation. WIVACE 2019, vol. 1200
Published in 2020

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Avalanches of perturbations in modular gene regulatory networks  

Vezzani, A.; Villani, M.; Serra, R.

In Artificial Life and Evolutionary Computation. WIVACE 2019, vol. 1200
Published in 2020

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Spread and dynamics of the COVID-19 epidemic in Italy: Effects of emergency containment measures

Gatto, M., Bertuzzo, E., Mari, L., Miccoli, S., Carraro, L., Casagrandi, R., & Rinaldo, A.

In Proceedings of the National Academy of Sciences, 117(19), 10484-10491
Published in 2020

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The geography of COVID-19 spread in Italy and implications for the relaxation of confinement measures

Bertuzzo, E., Mari, L., Pasetto, D., Miccoli, S., Casagrandi, R., Gatto, M., & Rinaldo, A.

In Nature Communications, 11, Article number: 4264
Published in 2020

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Local stakeholders’ narratives about large-scale urban development: The Zhejiang Hangzhou Future Sci-Tech City

Anzoise,V., Slanzi, D., Poli, I.

In Urban Studies, 57, 655-671
Published in 2020

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Multi-scenario analysis in the Adriatic Sea: A GIS-based Bayesian network to support maritime spatial planning

Furlan, E., Slanzi, D., Torresan, S., Critto, A., Marcomini, A. Furlan, E., Slanzi, D., Torresan, S., Critto, A., Marcomini, A. 

In Science Of The Total Environment, 703, article number: 134972
Published in 2020

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